Publications
Recent papers, software releases, and datasets from the collaboration.
2025
Paper
Peptide abundance correlations in metaproteomics enhance taxonomic and functional analysis of the human gut microbiome
Figeys Lab
npj Biofilms and Microbiomes
Paper
Microbiome-dependent functional responses to structurally distinct oligosaccharides revealed by metaproteomics
Figeys Lab
npj Biofilms and Microbiomes
Paper
Operational Taxon-Function Framework in MetaX: Unveiling Taxonomic and Functional Associations in Metaproteomics
Figeys Lab
Analytical Chemistry
Paper
PhyloFunc: phylogeny-informed functional distance as a new ecological metric for metaproteomic data analysis
Figeys Lab
Microbiome
2024
Paper
The Landscape and Perspectives of the Human Gut Metaproteomics
Figeys Lab
Molecular & Cellular Proteomics
Paper
RapidAIM 2.0: a high-throughput assay to study functional response of human gut microbiome to xenobiotics
Figeys Lab
Microbiome Research Reports
2023
2022
Paper
Evaluating live microbiota biobanking using an ex vivo microbiome assay and metaproteomics
Figeys Lab
Gut Microbes
Paper
Comprehensive Assessment of Functional Effects of Commonly Used Sugar Substitute Sweeteners on Ex Vivo Human Gut Microbiome
Figeys Lab
Microbiology Spectrum
Paper
MetaProClust-MS1: an MS1 Profiling Approach for Large-Scale Microbiome Screening
Figeys Lab
mSystems
Paper
Novel Bioinformatics Strategies Driving Dynamic Metaproteomic Studies
Figeys Lab
Methods in Molecular Biology
2021
Paper
Metaproteomic sample preparation methods bias the recovery of host and microbial proteins according to taxa and cellular compartment
Figeys Lab
Journal of Proteomics
Paper
Associations between Cellular Energy and Pediatric Inflammatory Bowel Disease Patient Response to Treatment
Figeys Lab
Journal of Proteome Research
Paper
Exploring the Microbiome-Wide Lysine Acetylation, Succinylation, and Propionylation in Human Gut Microbiota
Figeys Lab
Analytical Chemistry